.. Time-stamp: <2022-10-17 21:21:18 ycopin>

Softwares
=========

.. Note:: If you have found any of these softwares useful for your research, I
          would appreciate a citation or an acknowledgment.

.. image:: http://pyextinction.readthedocs.io/en/latest/_images/atmosphericExtinction.png
   :width: 50%
   :align: right
   :alt: Mauna-Kea atmospheric extinction (Buton+2013)
   :target: pyExtinction_

* `pyExtinction <http://pyextinction.readthedocs.io/en/latest/>`_

  This Python script/package computes and plots total atmospheric extinction
  from decomposition into physical components (Rayleigh attenuation, ozone
  absorption, aerosol extinction), as described in Buton+13_ *Atmospheric
  extinction properties above Mauna Kea from the Nearby Supernova Factory
  spectro-photometric data set*.

  .. image:: https://img.shields.io/badge/ascl-1403.002-blue.svg?colorB=262255
     :target: http://ascl.net/1403.002
     :alt: ascl:1403.002

  .. image:: https://readthedocs.org/projects/pyextinction/badge/?version=latest
     :target: http://pyextinction.readthedocs.io/en/latest/?badge=latest
     :alt: pyExtinction Documentation Status

  .. _Buton+13: http://cdsads.u-strasbg.fr/abs/2013A%26A...549A...8B

* `Euclid Spectroscopy Analysis Software
  <https://gitlab.in2p3.fr/ycopin/inSpec>`_

  This code addresses the different modules in SGS-SPE PE-5300 *Spectral
  Features Measurement*.

  .. image:: https://readthedocs.org/projects/inspec/badge/?version=latest
     :target: http://inspec.readthedocs.io/en/latest/?badge=latest
     :alt: InSpec Documentation Status

* `Grism-based Spectrograph Modeling
  <https://gitlab.in2p3.fr/ycopin/spectrogrism>`_

  This module implements the spectrograph optical model used for the
  SuperNova Integral Field Spectrograph Lantz+04_ data-reduction pipeline, and
  presented in Copin00_. It provides a flexible chromatic mapping between the
  input focal plane and the output detector plane, based on an effective
  simplified ray-tracing model of the key optical elements defining the
  spectrograph (collimator, prism, grating, camera), described by a
  restricted number of physically-motivated distortion parameters.

  .. _Lantz+04: http://adsabs.harvard.edu/abs/2004SPIE.5249..146L
  .. _Copin00: https://tel.archives-ouvertes.fr/tel-00001338/fr/

  .. image:: https://readthedocs.org/projects/spectrogrism/badge/?version=latest
     :target: http://spectrogrism.readthedocs.io/en/latest/?badge=latest
     :alt: SpectroGrism Documentation Status

* `Slitless spectroscopy <https://gitlab.in2p3.fr/ycopin/slitless>`_

  Python simulation and analysis tools for slitless spectroscopy.

* Professional repositories: `GitLab IN2P3 <https://gitlab.in2p3.fr/ycopin>`_,
  `GitLab Euclid <https://gitlab.euclid-sgs.uk/>`_
* Public repository: `GitHub <https://github.com/ycopin>`_
* `Gists <https://gist.github.com/ycopin>`_ et autres projets:

  ..
    .. raw:: html

       <script src="https://gist.github.com/ycopin/10155d1aae12b8dec08b.js"></script>

  * The much needed `EUCLID Acronym TranslatOR
    <https://gitlab.euclid-sgs.uk/ycopin/euclidator>`_, and its `online version
    <http://ycopin.pages.euclid-sgs.uk/euclidator/>`_

    .. image:: _static/images/euclidator.png
       :width: 80%
       :align: center
       :alt: EUCLID Acronym TranslatOR
       :target: http://ycopin.pages.euclid-sgs.uk/euclidator/

  * `[Xe]LaTeX template for Euclid Internal Notes
    <https://gist.github.com/ycopin/91c96868a755fbf88704>`_

  * `Taylor diagram <https://gist.github.com/ycopin/3342888>`_ for Matplotlib |taylor|

    .. image:: _static/images/taylorDiagram.png
       :width: 80%
       :align: center
       :alt: Taylor diagram
       :target: https://gist.github.com/ycopin/3342888

  * `imSpec <https://gist.github.com/ycopin/3131381>`_: encode a
    (normalized) 1D-array as ligthness component of an HLS image
    (matplotlib)

    .. image:: _static/images/imSpec.png
       :width: 80%
       :align: center
       :alt: imSpec
       :target: https://gist.github.com/ycopin/3131381

  * `spectrogram <https://gitlab.in2p3.fr/-/snippets/656>`_: as a 2D
    generalization (including vectorized versions of `colorsys.rgb_to_hsl` and
    `hsl_to_rgb`), the animated simulation of dispersed images.

    .. raw:: html

       <video width="480" height="270" controls
       style="display:block; margin: 0 auto;">
       <source src="_static/images/spectrograms.mp4" type="video/mp4">
       Your browser does not support the video tag.
       </video>

  * `seeing
    <https://gist.github.com/ycopin/619f5254e67886e06b79c836d8eead94>`_:
    simulation of Kolmogorov & von Karman seeing radial profiles in large
    telescopes (:math:`D\gg r_0`), using 0th- and 1st-order Hankel transforms.

    .. image:: _static/images/seeing_1.png
       :width: 80%
       :align: center
       :alt: seeing radial profile
       :target: https://gist.github.com/ycopin/619f5254e67886e06b79c836d8eead94

  * Numpy ND-array `rebinning
    <https://gist.github.com/ycopin/0ff0353f009ee495e9f9723049a9f74d>`_ using
    powerful stride tricks!

  * `pyyc \\pwik\\ <https://ycopin.pages.in2p3.fr/pyyc/>`_, a sample project
    for education purposes.

  * `pyTestExam <https://gitlab.in2p3.fr/ycopin/pyTestExam>`_, to test student
    Python code using `py.test <https://docs.pytest.org/>`_ machinery.

.. |taylor| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.5548061.svg
   :target: https://doi.org/10.5281/zenodo.5548061